Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus × euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.
Identifieur interne : 001500 ( Main/Exploration ); précédent : 001499; suivant : 001501Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus × euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.
Auteurs : Ming-Hui Zheng [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Min-Wei Guo [République populaire de Chine] ; Yong Li [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Enterobacteriaceae (classification), Enterobacteriaceae (génétique), Enterobacteriaceae (isolement et purification), Hybridation d'acides nucléiques (MeSH), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Typage par séquençage multilocus (MeSH), Écorce (microbiologie).
- MESH :
- génétique : ADN bactérien, ARN ribosomique 16S, Enterobacteriaceae.
- isolement et purification : Enterobacteriaceae.
- microbiologie : Maladies des plantes, Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien, Typage par séquençage multilocus.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Enterobacteriaceae (classification), Enterobacteriaceae (genetics), Enterobacteriaceae (isolation & purification), Multilocus Sequence Typing (MeSH), Nucleic Acid Hybridization (MeSH), Phylogeny (MeSH), Plant Bark (microbiology), Plant Diseases (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Enterobacteriaceae.
- genetics : Enterobacteriaceae.
- isolation & purification : Enterobacteriaceae.
- microbiology : Plant Bark, Plant Diseases, Populus.
- Bacterial Typing Techniques, Base Composition, China, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA.
Abstract
Two Gram-stain-negative, facultatively anaerobic, motile bacterial strains isolated from symptomatic bark of Populus × euramericana canker in China were investigated using a polyphasic approach, including 16S rRNA gene sequencing, multilocus sequence analysis, and biochemical and physiological assays. 16S rRNA gene sequencing indicated that these strains belonged to the genus Brenneria, family Pectobacteriaceae, and had the highest sequence similarity with Brenneria populi CFCC 11963T (98 %). DNA-DNA hybridization experiments revealed DNA-DNA relatedness values of 72.1-78.2 % between the new isolates and strains of B. populi, revealing that these strains belonged to the same species. The 16S rRNA gene sequencing and multilocus sequence analysis suggested that the two novel strains and those of B. populi are phylogenetically closely related but form two clearly separated subgroups. Based on the data, the two novel isolates represent a subspecies of B. populi for which the name B. populi subsp. brevivirga subsp. nov. is proposed with D8-10-4-5T (=CFCC 11935T=KCTC 42841T) as the type strain, with the automatic creation of B. populi subsp. populi subsp. nov. (type strain D9-5T=CFCC 11963T=KCTC 42088T).
DOI: 10.1099/ijsem.0.002183
PubMed: 28875909
Affiliations:
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type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing 100176, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing 100176</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><affiliation wicri:level="1"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry 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sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name><affiliation wicri:level="1"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name><affiliation wicri:level="1"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>China (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Enterobacteriaceae (classification)</term><term>Enterobacteriaceae (genetics)</term><term>Enterobacteriaceae (isolation & purification)</term><term>Multilocus Sequence Typing (MeSH)</term><term>Nucleic Acid Hybridization (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Bark (microbiology)</term><term>Plant Diseases (microbiology)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine (MeSH)</term><term>Composition en bases nucléiques (MeSH)</term><term>Enterobacteriaceae (classification)</term><term>Enterobacteriaceae (génétique)</term><term>Enterobacteriaceae (isolement et purification)</term><term>Hybridation d'acides nucléiques (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Phylogenèse (MeSH)</term><term>Populus (microbiologie)</term><term>Techniques de typage bactérien (MeSH)</term><term>Typage par séquençage multilocus (MeSH)</term><term>Écorce (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>China</term><term>Multilocus Sequence Typing</term><term>Nucleic Acid Hybridization</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Composition en bases nucléiques</term><term>Hybridation d'acides nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term><term>Typage par séquençage multilocus</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Two Gram-stain-negative, facultatively anaerobic, motile bacterial strains isolated from symptomatic bark of Populus × euramericana canker in China were investigated using a polyphasic approach, including 16S rRNA gene sequencing, multilocus sequence analysis, and biochemical and physiological assays. 16S rRNA gene sequencing indicated that these strains belonged to the genus Brenneria, family Pectobacteriaceae, and had the highest sequence similarity with Brenneria populi CFCC 11963T (98 %). DNA-DNA hybridization experiments revealed DNA-DNA relatedness values of 72.1-78.2 % between the new isolates and strains of B. populi, revealing that these strains belonged to the same species. The 16S rRNA gene sequencing and multilocus sequence analysis suggested that the two novel strains and those of B. populi are phylogenetically closely related but form two clearly separated subgroups. Based on the data, the two novel isolates represent a subspecies of B. populi for which the name B. populi subsp. brevivirga subsp. nov. is proposed with D8-10-4-5T (=CFCC 11935T=KCTC 42841T) as the type strain, with the automatic creation of B. populi subsp. populi subsp. nov. (type strain D9-5T=CFCC 11963T=KCTC 42088T).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28875909</PMID><DateCompleted><Year>2017</Year><Month>09</Month><Day>20</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>9</Issue><PubDate><Year>2017</Year><Month>Sep</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus × euramericana canker, and description of Brenneria populi subsp. populi subsp. nov.</ArticleTitle><Pagination><MedlinePgn>3633-3638</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002183</ELocationID><Abstract><AbstractText>Two Gram-stain-negative, facultatively anaerobic, motile bacterial strains isolated from symptomatic bark of Populus × euramericana canker in China were investigated using a polyphasic approach, including 16S rRNA gene sequencing, multilocus sequence analysis, and biochemical and physiological assays. 16S rRNA gene sequencing indicated that these strains belonged to the genus Brenneria, family Pectobacteriaceae, and had the highest sequence similarity with Brenneria populi CFCC 11963T (98 %). DNA-DNA hybridization experiments revealed DNA-DNA relatedness values of 72.1-78.2 % between the new isolates and strains of B. populi, revealing that these strains belonged to the same species. The 16S rRNA gene sequencing and multilocus sequence analysis suggested that the two novel strains and those of B. populi are phylogenetically closely related but form two clearly separated subgroups. Based on the data, the two novel isolates represent a subspecies of B. populi for which the name B. populi subsp. brevivirga subsp. nov. is proposed with D8-10-4-5T (=CFCC 11935T=KCTC 42841T) as the type strain, with the automatic creation of B. populi subsp. populi subsp. nov. (type strain D9-5T=CFCC 11963T=KCTC 42088T).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Ming-Hui</ForeName><Initials>MH</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing 100176, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piao</LastName><ForeName>Chun-Gen</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xue</LastName><ForeName>Han</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Min-Wei</ForeName><Initials>MW</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>09</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004755" MajorTopicYN="N">Enterobacteriaceae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058885" MajorTopicYN="N">Multilocus Sequence Typing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>9</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>9</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28875909</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.002183</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zheng, Ming Hui" sort="Zheng, Ming Hui" uniqKey="Zheng M" first="Ming-Hui" last="Zheng">Ming-Hui Zheng</name></noRegion><name sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name><name sortKey="Zheng, Ming Hui" sort="Zheng, Ming Hui" uniqKey="Zheng M" first="Ming-Hui" last="Zheng">Ming-Hui Zheng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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